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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13723113_13723195_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13723113 - 13723195
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTACG
5'SS Class:
major
3'SS Sequence:
GCTTGCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTGGAC
U12 Branch Point Sequence:
CCCTGGACAGCT
Flanking Amino Acid:
KVSSVRVQSGTWVGYQYPGY
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.3
71.4
40.3
Major BPS
44.7
-0.3
1.3
40.4
40
Major PPT
76.9
0.61
0.9
69.4
36.8
Minor 5ss
32
-2.1
2.6
34.1
33.8
Minor BPS
30.4
-1.4
2.4
44.18
46.3

Associated Gene:

Gene:
CRYBB2
Ensembl Gene ID:
ENSAPLG00000010294
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010727
13721676 - 13723516
1841