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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13753803_13760382_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13753803 - 13760382
Intron Length:
6580

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
PGHGAQWCYAGIRSVMQKYL
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
74.9
35.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
94.5
1
0.5
93.1
16
Minor 5ss
29.4
-2.4
3.1
33.3
41.7
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
GRK3
Ensembl Gene ID:
ENSAPLG00000010529
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011022
13753753 - 13809824
56072