About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13782906_13784079_F


Intron Information:

Intron Rank:
4

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
13782906 - 13784079

Intron Length:
1174

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAC|GTGCGTATC

5'SS Class:
major

3'SS Sequence:
CTTTTTCCAAAAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TGATAAT

U12 Branch Point Sequence:
TTTTTCCAAAAG

Flanking Amino Acid:
IMKELLSCSHPFSKQAVDHV

Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
67.7
0.42
1.3
72.4
39.2

Major BPS
72.6
0.56
1.2
72.3
40.4

Major PPT
69.8
0.45
1
72.4
31.3

Minor 5ss
35.2
-1.7
3.1
44.2
36.9

Minor BPS
48.7
-0.2
2.1
64.91
42.8

Associated Gene:

Gene:
GRK3

Ensembl Gene ID:

Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

13758061 - 13809824
51764

13753753 - 13809824
56072

13758061 - 13809824
51764