About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13784155_13785769_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13784155 - 13785769
Intron Length:
1615

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTTA
5'SS Class:
strong_major
3'SS Sequence:
AATCCTTTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TGTTTCTTAATC
Flanking Amino Acid:
KKQVPASLFQPYIEEICDSL
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.8
80.9
28.8
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
76.7
0.6
0.8
74.1
35.6
Minor 5ss
34.9
-1.7
3.4
46.2
49.1
Minor BPS
81.1
0.96
1
82.67
30.6

Associated Gene:

Gene:
GRK3
Ensembl Gene ID:
ENSAPLG00000010529
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011022
13753753 - 13809824
56072
ENSAPLT00000044387
13758061 - 13809824
51764
ENSAPLT00000036765
13758061 - 13809824
51764