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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13785832_13786933_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13785832 - 13786933
Intron Length:
1102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGACG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTTTTTCTAACT
Flanking Amino Acid:
RGKIFQKFMESDKFTRFCQW
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
68.7
41.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
95.8
1.03
0.5
92
19.1
Minor 5ss
38.7
-1.3
3
49
47
Minor BPS
66.3
0.59
1.7
83.74
37.5

Associated Gene:

Gene:
GRK3
Ensembl Gene ID:
ENSAPLG00000010529
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044387
13758061 - 13809824
51764
ENSAPLT00000036765
13758061 - 13809824
51764
ENSAPLT00000011022
13753753 - 13809824
56072