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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13786986_13787575_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13786986 - 13787575
Intron Length:
590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CCCCTGCTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
CCCTGCTTACAG
Flanking Amino Acid:
QWKNVELNIHLTMNDFSVHR
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
86.5
28.5
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
74.7
0.55
0.8
67.1
32.7
Minor 5ss
40.8
-1
2.8
57.5
39.6
Minor BPS
43
-0.6
2.1
43.4
48.1

Associated Gene:

Gene:
GRK3
Ensembl Gene ID:
ENSAPLG00000010529
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044387
13758061 - 13809824
51764
ENSAPLT00000036765
13758061 - 13809824
51764
ENSAPLT00000011022
13753753 - 13809824
56072