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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13798774_13799589_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13798774 - 13799589
Intron Length:
816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTAGT
5'SS Class:
major
3'SS Sequence:
TTCTACTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTGTTTGTAATC
Flanking Amino Acid:
DFSKKKPHASVGTHGYMAPE
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
74.7
41.5
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
82.5
0.73
0.8
80.5
31.1
Minor 5ss
39.4
-1.2
2.9
52.3
44.3
Minor BPS
55.1
0.14
2
68.78
38

Associated Gene:

Gene:
GRK3
Ensembl Gene ID:
ENSAPLG00000010529
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011022
13753753 - 13809824
56072
ENSAPLT00000044387
13758061 - 13809824
51764
ENSAPLT00000036765
13758061 - 13809824
51764