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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13799698_13802086_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13799698 - 13802086
Intron Length:
2389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATTTTCTTATTT
Flanking Amino Acid:
LGCMLFKLLRGHSPFRQHKT
Intron Amino Acid Position:
366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
73.7
32.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
85.7
0.8
0.8
80.1
31.9
Minor 5ss
26.1
-2.7
2.9
22.6
37.5
Minor BPS
71.3
0.75
1.5
85.73
34.6

Associated Gene:

Gene:
GRK3
Ensembl Gene ID:
ENSAPLG00000010529
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044387
13758061 - 13809824
51764
ENSAPLT00000036765
13758061 - 13809824
51764
ENSAPLT00000011022
13753753 - 13809824
56072