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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13802154_13802373_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13802154 - 13802373
Intron Length:
220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
CTTTTTTTCATA
Flanking Amino Acid:
HEIDRMTLTVNVELPDSFSP
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
78.7
35.3
Major BPS
67.7
0.44
1
58
38.9
Major PPT
86.5
0.82
0.6
83.5
24.9
Minor 5ss
37
-1.5
3.3
48.9
41.6
Minor BPS
57.9
0.24
1.7
69.67
37.9

Associated Gene:

Gene:
GRK3
Ensembl Gene ID:
ENSAPLG00000010529
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011022
13753753 - 13809824
56072
ENSAPLT00000044387
13758061 - 13809824
51764
ENSAPLT00000036765
13758061 - 13809824
51764