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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13803732_13804114_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13803732 - 13804114
Intron Length:
383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTGAATTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTGTCTGTAATT
Flanking Amino Acid:
IDWQQVYLQKYPPPLIPPRG
Intron Amino Acid Position:
445

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
69.8
34.7
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
75.7
0.58
0.9
66.9
43.8
Minor 5ss
28.9
-2.4
3.6
40.1
46.3
Minor BPS
64
0.52
2
83.09
39.1

Associated Gene:

Gene:
GRK3
Ensembl Gene ID:
ENSAPLG00000010529
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044387
13758061 - 13809824
51764
ENSAPLT00000036765
13758061 - 13809824
51764
ENSAPLT00000011022
13753753 - 13809824
56072