About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13804211_13807021_F


Intron Information:

Intron Rank:
17

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
13804211 - 13807021

Intron Length:
2811

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTATACAAC

5'SS Class:
major

3'SS Sequence:
TTTCTCTTGCAAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTTAT

U12 Branch Point Sequence:
TGTTTTTTATGT

Flanking Amino Acid:
FDEEDTKGIKLLDSDQELYK

Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
73.1
0.54
1
67.4
37.9

Major BPS
96.5
1.15
0.6
86
34.2

Major PPT
70.5
0.46
1.1
71.6
38.5

Minor 5ss
45.1
-0.5
2.7
59.7
45.1

Minor BPS
55.3
0.25
1.9
75.62
41.6

Associated Gene:

Gene:
GRK3

Ensembl Gene ID:

Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

13758061 - 13809824
51764

13753753 - 13809824
56072

13758061 - 13809824
51764