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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13807973_13808269_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13807973 - 13808269
Intron Length:
297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCATTTTTCATT
Flanking Amino Acid:
LEWRGEGESRDRWTIYTKKH
Intron Amino Acid Position:
596

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
68.8
43.8
Major BPS
100
1.24
0.5
100
0
Major PPT
79.9
0.67
0.8
79.1
33.9
Minor 5ss
33.1
-1.9
2.8
33
41.8
Minor BPS
55.2
0.24
1.7
71.31
40.8

Associated Gene:

Gene:
GRK3
Ensembl Gene ID:
ENSAPLG00000010529
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044387
13758061 - 13809824
51764