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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13809092_13809662_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13809092 - 13809662
Intron Length:
571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
GTATCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTACTAT
U12 Branch Point Sequence:
ACTTCTGTATCT
Flanking Amino Acid:
GGKQFVLQCESDPEFVQWKK
Intron Amino Acid Position:
615

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
75.9
34.8
Major BPS
62.1
0.3
1.4
61.1
45
Major PPT
80.8
0.69
0.9
77.6
36.5
Minor 5ss
38.3
-1.3
3.1
50.9
45.7
Minor BPS
49.9
0.07
2.2
73.56
43.9

Associated Gene:

Gene:
GRK3
Ensembl Gene ID:
ENSAPLG00000010529
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044387
13758061 - 13809824
51764
ENSAPLT00000036765
13758061 - 13809824
51764
ENSAPLT00000011022
13753753 - 13809824
56072