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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13822276_13822382_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13822276 - 13822382
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTCGCG
5'SS Class:
major
3'SS Sequence:
TGCTCCCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
TGCTGCTGACGC
Flanking Amino Acid:
TGRITAAHLQTMLLERGRVA
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.1
53.7
43.7
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
71.4
0.48
0.8
62.1
34.7
Minor 5ss
35.7
-1.6
3.5
48.2
47.4
Minor BPS
41
-0.7
2.2
51.35
45.6

Associated Gene:

Gene:
MYO18B
Ensembl Gene ID:
ENSAPLG00000018788
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039893
13819876 - 13856337
36462
ENSAPLT00000028857
13816092 - 13856337
40246
ENSAPLT00000023674
13821078 - 13836283
15206