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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13823997_13828686_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
13823997 - 13828686
Intron Length:
4690

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TGGTGACTCCGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AGATGAA
U12 Branch Point Sequence:
AATCTGGTGACT
Flanking Amino Acid:
YHLGAAGACKELDGAIGRKQ
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
51.5
0.04
1.2
43.5
39.2
Major PPT
47.4
-0.1
1.7
47.3
45.1
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
42
-0.5
2.5
63.03
41.2

Associated Gene:

Gene:
MYO18B
Ensembl Gene ID:
ENSAPLG00000018788
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039893
13819876 - 13856337
36462