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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13830245_13831036_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
13830245 - 13831036
Intron Length:
792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCCCCAG
5'SS Class:
weak_major
3'SS Sequence:
GCTCCTCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
GCAGCAATAAAT
Flanking Amino Acid:
RLPPEEDSPSGPKMTGMECV
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.3
0.22
1.2
46.9
45
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
69.5
0.44
1
65
36.3
Minor 5ss
36.2
-1.6
3.2
46.8
48.5
Minor BPS
43.4
-0.4
2
57.4
44.2

Associated Gene:

Gene:
MYO18B
Ensembl Gene ID:
ENSAPLG00000018788
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039893
13819876 - 13856337
36462
ENSAPLT00000028857
13816092 - 13856337
40246
ENSAPLT00000023674
13821078 - 13836283
15206