Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13834105_13834364_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

13834105 - 13834364

Intron Length:

260

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GGG|GCAGTCCAG

5'SS Class:

weak_major

3'SS Sequence:

GTGCGAGCAGGAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CTTGCAG

U12 Branch Point Sequence:

TCTTGCAGGACC

Flanking Amino Acid:

KGPDQDGKLGLHFEIPHQLG

Intron Amino Acid Position:

545

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.17

1.3

40.8

45.4

Major BPS

45.5

-0.2

1.7

60.7

45.9

Major PPT

42.2

-0.4

1.7

36.8

39.7

Minor 5ss

25.1

-2.9

29.2

43.4

Minor BPS

46.2

-0.3

2.2

63.5

42.2

Associated Gene:

Gene:

MYO18B

Ensembl Gene ID:

ENSAPLG00000018788

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039893

13819876 - 13856337

36462

ENSAPLT00000028857

13816092 - 13856337

40246