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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13834493_13834937_F

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
13834493 - 13834937
Intron Length:
445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
CGCCCCCCAGGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACTGCAG
U12 Branch Point Sequence:
AGCCCCAGCACC
Flanking Amino Acid:
NASQLLQQSRLAVQELVLPR
Intron Amino Acid Position:
566

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.1
72.2
37.5
Major BPS
42
-0.5
1.6
51.1
44.3
Major PPT
45.8
-0.2
1.6
47.3
29.5
Minor 5ss
39.9
-1.1
2.8
57.3
39.7
Minor BPS
41.3
-0.7
2
49.28
40.1

Associated Gene:

Gene:
MYO18B
Ensembl Gene ID:
ENSAPLG00000018788
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023674
13821078 - 13836283
15206