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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13835119_13835705_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13835119 - 13835705
Intron Length:
587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
GCTTGTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
CCCCACTGACCT
Flanking Amino Acid:
SVCAQLKLQADALTSLLRRS
Intron Amino Acid Position:
627

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
63.5
42.9
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
71.4
0.48
0.9
61.9
40
Minor 5ss
27.1
-2.6
3
31.9
42.5
Minor BPS
43.3
-0.4
1.9
54.84
46.5

Associated Gene:

Gene:
MYO18B
Ensembl Gene ID:
ENSAPLG00000018788
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039893
13819876 - 13856337
36462
ENSAPLT00000028857
13816092 - 13856337
40246
ENSAPLT00000023674
13821078 - 13836283
15206