Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13853380_13855581_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

13853380 - 13855581

Intron Length:

2202

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CAT|GCAGAGCTT

5'SS Class:

major

3'SS Sequence:

CGCTCTCGGAGAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCCCCAA

U12 Branch Point Sequence:

CGCTCCCCAAGT

Flanking Amino Acid:

FSLLSLPFSHLPGSPPAPPW

Intron Amino Acid Position:

1335

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

60.2

0.24

1.3

65.2

38.5

Major BPS

50.5

0.01

1.3

60.6

37.4

Major PPT

45.5

-0.2

1.7

48.6

39.4

Minor 5ss

26.8

-2.7

4.6

50.3

46.6

Minor BPS

-0.3

2.1

61.5

47.7

Associated Gene:

Gene:

MYO18B

Ensembl Gene ID:

ENSAPLG00000018788

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039893

13819876 - 13856337

36462

ENSAPLT00000028857

13816092 - 13856337

40246