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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13863656_13864056_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13863656 - 13864056
Intron Length:
401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTGAGTGAG
5'SS Class:
major
3'SS Sequence:
CCTCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAC
U12 Branch Point Sequence:
TCTTCTCTCCTC
Flanking Amino Acid:
ARDTLCSRRETDACSSVGSV
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.3
68.4
38.7
Major BPS
64.5
0.36
1
65.2
28.2
Major PPT
75
0.56
0.7
69
24.7
Minor 5ss
28
-2.5
3
30.3
36.2
Minor BPS
35.7
-1.1
3.6
57.86
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026711
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019932
13863378 - 13871779
8402