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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13864219_13870484_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13864219 - 13870484
Intron Length:
6266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTCGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAC
U12 Branch Point Sequence:
GCTGCTTAAACT
Flanking Amino Acid:
SIGSRSAQGPRGSRDTAEPA
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
73.9
36.8
Major BPS
68.4
0.46
0.9
69.3
26.9
Major PPT
70.9
0.47
0.9
69.2
37
Minor 5ss
29.6
-2.3
3.5
41.1
45.6
Minor BPS
56.7
0.29
1.8
71.8
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026711
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019932
13863378 - 13871779
8402