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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13921148_13924496_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13921148 - 13924496
Intron Length:
3349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CTGCTCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTCAC
U12 Branch Point Sequence:
ACAGCCTCACCG
Flanking Amino Acid:
VYTGYGVELQVKSVNLSDGE
Intron Amino Acid Position:
341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
85.9
23.9
Major BPS
54.7
0.12
1.2
59.2
39.1
Major PPT
71
0.47
0.8
62
34.8
Minor 5ss
29.7
-2.3
3
39.4
46.1
Minor BPS
44.9
-0.5
1.9
46.59
46

Associated Gene:

Gene:
SEZ6L
Ensembl Gene ID:
ENSAPLG00000030794
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035161
13919857 - 13926708
6852