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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13946328_13947865_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13946328 - 13947865
Intron Length:
1538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CCCTGTCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCACAA
U12 Branch Point Sequence:
ACAACCCTGACT
Flanking Amino Acid:
QLPTASEMIIRNASTAVYAC
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
67.8
43.5
Major BPS
53.3
0.08
1.1
61
37.5
Major PPT
74.6
0.55
0.8
64.9
36.4
Minor 5ss
28.6
-2.5
3.5
37.8
47.1
Minor BPS
52.7
0.16
1.7
68.11
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012494
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013035
13945182 - 13951788
6607