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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13947975_13948367_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13947975 - 13948367
Intron Length:
393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGCCCT
5'SS Class:
major
3'SS Sequence:
CTCTGTTTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
AGGCTCCTAACG
Flanking Amino Acid:
HYDCIQNVLTANLPPAPGPL
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1.1
66.3
45.2
Major BPS
72
0.55
1
71.8
31.4
Major PPT
75.1
0.56
1
71.9
38
Minor 5ss
40.1
-1.1
3.1
49.8
46
Minor BPS
48.7
-0.2
1.8
52.69
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012494
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013035
13945182 - 13951788
6607