About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13948501_13950429_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13948501 - 13950429
Intron Length:
1929

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CTGCCCTGTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
ATGCTCTGACCT
Flanking Amino Acid:
RADQSSIENVYHSSLASLNG
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
74
36.6
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
70.6
0.46
1
64.9
36.3
Minor 5ss
30.8
-2.2
2.6
33.6
35.6
Minor BPS
49.5
0.04
1.7
68.36
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012494
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013035
13945182 - 13951788
6607