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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13956133_13961288_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13956133 - 13961288
Intron Length:
5156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCGGGG
5'SS Class:
major
3'SS Sequence:
GCCCCCCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAA
U12 Branch Point Sequence:
AAGGCCTAAAGC
Flanking Amino Acid:
AGICCFHPRQTPPEQQELLC
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.3
51
43.3
Major BPS
65.2
0.38
0.9
65.5
27.9
Major PPT
64.2
0.32
0.8
53.7
31
Minor 5ss
32.8
-2
3.8
46.4
49
Minor BPS
46.4
-0.2
2
53.34
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022917
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020016
13953200 - 13963660
10461
ENSAPLT00000017753
13953200 - 13961967
8768