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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13961374_13963622_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
13961374 - 13963622
Intron Length:
2249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTCGTTG
5'SS Class:
weak_major
3'SS Sequence:
CCCTCAGGTGTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
TGCCCCTCAGGT
Flanking Amino Acid:
PVCAGETSGRSCFFLYDGSK
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.5
0.34
1.2
59.1
42.2
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
59.5
0.21
1
53.5
35.6
Minor 5ss
46.5
-0.4
3.1
63.6
48.1
Minor BPS
45.4
-0.2
2
62.65
46.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022917
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020016
13953200 - 13963660
10461