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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13961380_13961926_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
13961380 - 13961926
Intron Length:
547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGCCGGGC
5'SS Class:
weak_major
3'SS Sequence:
CCGTGCCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
TGCCGCCTGACG
Flanking Amino Acid:
LCSSSSRKASWCSCFFLYDG
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.5
0.06
1.2
42.9
38.4
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
66.2
0.36
0.9
61.7
34.9
Minor 5ss
28.7
-2.4
3.7
37.9
42.4
Minor BPS
43.7
-0.6
2.1
49.82
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022917
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017753
13953200 - 13961967
8768