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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13961712_13961747_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
13961712 - 13961747
Intron Length:
36

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGG|GCGCGGTGC
5'SS Class:
major
3'SS Sequence:
GAGGCGCGGTGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCTGAG
U12 Branch Point Sequence:
CGGTGCTGAGGA
Flanking Amino Acid:
NGNGGGMRGGVRDPPPPKPR
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.3
0.31
1.2
52.7
41.4
Major BPS
52.2
0.06
1.6
51.1
46.3
Major PPT
38.8
-0.6
1.7
31.5
41.8
Minor 5ss
19.8
-3.5
3.9
23
37.7
Minor BPS
38.8
-0.8
2.1
44.47
44.1

Associated Gene:

Gene:
SRRD
Ensembl Gene ID:
ENSAPLG00000017738
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046800
13961582 - 13963318
1737