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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13962779_13962856_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13962779 - 13962856
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
CTGCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGTGCAG
U12 Branch Point Sequence:
GCAGCCCCAGCC
Flanking Amino Acid:
LGLRLLPENEEGKHQVQDSP
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
33.2
Major BPS
37.4
-0.7
1.7
42.8
49.4
Major PPT
71.8
0.49
0.8
65.7
30.3
Minor 5ss
24.1
-3
3.2
29.7
43.3
Minor BPS
39.7
-0.8
2
45.21
42.6

Associated Gene:

Gene:
SRRD
Ensembl Gene ID:
ENSAPLG00000017738
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046800
13961582 - 13963318
1737