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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13965241_13966331_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13965241 - 13966331
Intron Length:
1091

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTGGC
5'SS Class:
major
3'SS Sequence:
GTCTGCCCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTGTTCTCACGT
Flanking Amino Acid:
IMNRAVSSSVGGYMQPGARE
Intron Amino Acid Position:
708

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.1
65.5
39.9
Major BPS
85
0.87
0.8
85.6
23
Major PPT
64.7
0.33
1
55.8
40.1
Minor 5ss
31.8
-2.1
3.4
40.2
41.3
Minor BPS
48.3
-0
2.1
71.18
46

Associated Gene:

Gene:
TFIP11
Ensembl Gene ID:
ENSAPLG00000012229
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012761
13964790 - 13974248
9459