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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13966910_13967568_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13966910 - 13967568
Intron Length:
659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGACAG
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAG
U12 Branch Point Sequence:
TCTGCTGTAACT
Flanking Amino Acid:
FMVKNIVPKLGMCLNELIIN
Intron Amino Acid Position:
605

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
67.7
39.3
Major BPS
60.5
0.26
1.7
69.7
44.2
Major PPT
75.3
0.57
0.8
68.4
37.4
Minor 5ss
25.9
-2.8
2.9
29.3
43.4
Minor BPS
58
0.33
2.1
78.9
44

Associated Gene:

Gene:
TFIP11
Ensembl Gene ID:
ENSAPLG00000012229
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012761
13964790 - 13974248
9459