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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13967813_13968016_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13967813 - 13968016
Intron Length:
204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATGG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAGGAA
U12 Branch Point Sequence:
GACTTAGGAATT
Flanking Amino Acid:
QLIFPKLQKEVENWNPLTDT
Intron Amino Acid Position:
524

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
72.5
39.9
Major BPS
50.5
0.01
1.4
51.7
43.9
Major PPT
81.5
0.71
0.9
77.9
36.6
Minor 5ss
37.3
-1.4
3
47.6
47.9
Minor BPS
40.7
-0.6
2.1
55.41
40.7

Associated Gene:

Gene:
TFIP11
Ensembl Gene ID:
ENSAPLG00000012229
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012761
13964790 - 13974248
9459