About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13968186_13968400_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13968186 - 13968400
Intron Length:
215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAAG
5'SS Class:
strong_major
3'SS Sequence:
GATTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TTGAACTTAACT
Flanking Amino Acid:
GQDLSTDAFHRLMWEIWMPY
Intron Amino Acid Position:
467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
80.3
34.3
Major BPS
84
0.85
0.9
75
39.9
Major PPT
85.4
0.8
0.8
77.2
41.6
Minor 5ss
34.4
-1.8
2.8
41.5
45.1
Minor BPS
72.6
0.79
1.5
86.1
39.5

Associated Gene:

Gene:
TFIP11
Ensembl Gene ID:
ENSAPLG00000012229
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012761
13964790 - 13974248
9459