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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13968508_13969209_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13968508 - 13969209
Intron Length:
702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTATCGTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTTAT
U12 Branch Point Sequence:
TACACCTTATCG
Flanking Amino Acid:
DYFKNWDPLKDCTYGTEIIA
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.8
83.1
28.7
Major BPS
70
0.5
1
59.6
38.6
Major PPT
81.8
0.71
0.9
73.2
41.8
Minor 5ss
39.3
-1.2
3.3
57.3
47.4
Minor BPS
58
0.11
1.8
61.41
45.9

Associated Gene:

Gene:
TFIP11
Ensembl Gene ID:
ENSAPLG00000012229
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012761
13964790 - 13974248
9459