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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13969720_13970312_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13969720 - 13970312
Intron Length:
593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTTGGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CGTTTTTTAAGA
Flanking Amino Acid:
APQKELSQVKVIDMTGREQK
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
64.7
0.33
1.2
67.5
42.8
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
60.1
0.31
1.6
66.82
40.3

Associated Gene:

Gene:
TFIP11
Ensembl Gene ID:
ENSAPLG00000012229
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012761
13964790 - 13974248
9459