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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13976236_13977475_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13976236 - 13977475
Intron Length:
1240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CCTTCTTTATTT
Flanking Amino Acid:
IGKPGGVSLSKIERSTDQVI
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
78.5
28.9
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
89.2
0.88
0.7
81.5
35.8
Minor 5ss
33.5
-1.9
3.3
43.7
38.1
Minor BPS
63
0.49
1.6
74.81
43.2

Associated Gene:

Gene:
TPST2
Ensembl Gene ID:
ENSAPLG00000012183
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012688
13976001 - 13978311
2311