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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13987497_13987839_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13987497 - 13987839
Intron Length:
343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTGAGTGAC
5'SS Class:
major
3'SS Sequence:
CCCCTCTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
GGAGCCTGACCC
Flanking Amino Acid:
RVRSVIVSSGPWVAYEQANM
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.3
63.1
37.6
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
72.8
0.51
0.8
64.3
31
Minor 5ss
29.4
-2.4
3.1
39
39.9
Minor BPS
46.7
-0.2
1.8
53.92
43.2

Associated Gene:

Gene:
CRYBB1
Ensembl Gene ID:
ENSAPLG00000012072
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012569
13986726 - 13988757
2032