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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13987959_13988637_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13987959 - 13988637
Intron Length:
679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGCCCC
5'SS Class:
major
3'SS Sequence:
CCTCTGCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCCCAT
U12 Branch Point Sequence:
CCTGCCCGAGCC
Flanking Amino Acid:
GEEPAAEAFRIIVFEQENFQ
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.1
60.6
44.5
Major BPS
46.8
-0.2
1.4
54.3
42.9
Major PPT
70.6
0.46
0.8
61.2
35.1
Minor 5ss
38.7
-1.3
3
44.2
43.2
Minor BPS
42.4
-0.6
2
51.63
45.3

Associated Gene:

Gene:
CRYBB1
Ensembl Gene ID:
ENSAPLG00000012072
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012569
13986726 - 13988757
2032