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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13991905_13992067_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13991905 - 13992067
Intron Length:
163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGC|GTGAGTGCG
5'SS Class:
major
3'SS Sequence:
ACCTCCCCGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAC
U12 Branch Point Sequence:
CTCACCCCACCT
Flanking Amino Acid:
TVRSFKIESGAWAGFEHCGF
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.3
0.32
1.3
56.7
42.7
Major BPS
57.5
0.19
1.1
60.7
37.6
Major PPT
63.6
0.31
1
58.4
32.4
Minor 5ss
28.5
-2.5
3
28.1
36.2
Minor BPS
43.2
-0.4
2.1
61.49
47.8

Associated Gene:

Gene:
CRYBA4
Ensembl Gene ID:
ENSAPLG00000027723
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037237
13991624 - 13992702
1079