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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14082386_14141786_R

Intron Information:

Intron Rank:
146912
Intron Class:
major
Intron Phase:
Intron Coordinates:
14082386 - 14141786
Intron Length:
59401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAAATT
5'SS Class:
major
3'SS Sequence:
TTGCTCGGCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
79.6
33.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
67.2
0.39
1
65.2
41.1
Minor 5ss
38.9
-1.2
3.3
54.9
43.5
Minor BPS
80.2
0.94
1.3
88.36
28.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026356
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022649
14082329 - 14147245
64917