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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14106045_14141786_R

Intron Information:

Intron Rank:
146914
Intron Class:
major
Intron Phase:
Intron Coordinates:
14106045 - 14141786
Intron Length:
35742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAAATT
5'SS Class:
major
3'SS Sequence:
TTTCCCTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
ACAAACAAAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
79.6
33.2
Major BPS
71.6
0.54
1
72
33.1
Major PPT
81.2
0.7
0.7
73.5
31.5
Minor 5ss
38.9
-1.2
3.3
54.9
43.5
Minor BPS
39.9
-0.7
1.9
44.38
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026356
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031815
14105468 - 14147245
41778