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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14142012_14146368_R

Intron Information:

Intron Rank:
146913
Intron Class:
major
Intron Phase:
Intron Coordinates:
14142012 - 14146368
Intron Length:
4357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTGAGTGCC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTAAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCAAA
U12 Branch Point Sequence:
TTTTTTTTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.1
0.38
1.3
62
37
Major BPS
62.7
0.32
1.2
71
33.2
Major PPT
87.3
0.84
0.9
89.9
23.6
Minor 5ss
30
-2.3
3.1
36.6
34.4
Minor BPS
72.6
0.57
1.4
75.95
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026356
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037922
14134276 - 14147245
12970
ENSAPLT00000031815
14105468 - 14147245
41778
ENSAPLT00000022649
14082329 - 14147245
64917