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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1432799_1434728_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1432799 - 1434728
Intron Length:
1930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAGCT
5'SS Class:
strong_major
3'SS Sequence:
GACCTCACTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TTCTATTTGACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
74.4
33.9
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
63.9
0.31
0.9
59.7
36.4
Minor 5ss
33.1
-1.9
3.4
48.8
46.8
Minor BPS
65.8
0.48
1.5
74.4
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012171
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048397
1144737 - 1434770
290034