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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14355181_14457341_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14355181 - 14457341
Intron Length:
102161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTGTT
5'SS Class:
major
3'SS Sequence:
CCCTCCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
TTTTGCTAATCC
Flanking Amino Acid:
KPKPPNPSKEGCDSTQSHVD
Intron Amino Acid Position:
1145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
77.9
36.9
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
78.8
0.65
0.7
72.3
25.8
Minor 5ss
51
0.03
2.9
75.5
40.6
Minor BPS
51.3
0.02
2.3
73.85
43.3

Associated Gene:

Gene:
MN1
Ensembl Gene ID:
ENSAPLG00000024149
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045866
14352737 - 14460898
108162