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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1439247_1442499_F

Intron Information:

Intron Rank:
144026
Intron Class:
major
Intron Phase:
Intron Coordinates:
1439247 - 1442499
Intron Length:
3253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TAATGCTAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.6
21.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
88.5
0.87
0.6
84
24.1
Minor 5ss
43.9
-0.7
3.2
64.8
46.5
Minor BPS
58
0.33
2.1
78.04
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027631
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021219
1438998 - 1443207
4210