About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1442557_1442961_F

Intron Information:

Intron Rank:
144027
Intron Class:
major
Intron Phase:
Intron Coordinates:
1442557 - 1442961
Intron Length:
405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTAAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TTTTCTGTAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
73.6
0.53
1
70
39.4
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
62.3
0.37
2.1
79.33
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027631
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021219
1438998 - 1443207
4210