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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14436981_14457341_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14436981 - 14457341
Intron Length:
20361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTGTT
5'SS Class:
major
3'SS Sequence:
CTTTTGATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
AGTGCTTGAACT
Flanking Amino Acid:
KPKPPNPSKEGKLFPEVSSY
Intron Amino Acid Position:
1145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
77.9
36.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
80
0.68
0.8
78.1
35
Minor 5ss
51
0.03
2.9
75.5
40.6
Minor BPS
62
0.45
1.6
76.06
40.4

Associated Gene:

Gene:
MN1
Ensembl Gene ID:
ENSAPLG00000024149
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020399
14436895 - 14460898
24004