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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14467792_14469862_R

Intron Information:

Intron Rank:
133213
Intron Class:
major
Intron Phase:
Intron Coordinates:
14467792 - 14469862
Intron Length:
2071

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
GCACTGTTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
73.7
32.5
Major BPS
84.4
0.85
1
84
34.5
Major PPT
100
1.12
0.4
100
0
Minor 5ss
26.1
-2.7
2.9
22.6
37.5
Minor BPS
47
-0.2
2
53.67
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018913
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027349
14466811 - 14470312
3502